PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G136000.1
Common NamePHAVU_010G136000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 294aa    MW: 32229.3 Da    PI: 9.8008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G136000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT++E++ l+ +v+++G+g Wk I +  +     + R+  ++k++w+++
  Phvul.010G136000.1  5 KQKWTQDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 56
                        79************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.457162IPR017930Myb domain
SuperFamilySSF466896.76E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-15456IPR009057Homeodomain-like
SMARTSM007171.1E-8459IPR001005SANT/Myb domain
PfamPF002495.1E-10556IPR001005SANT/Myb domain
CDDcd116603.31E-21656No hitNo description
SMARTSM005266.6E-17119184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-15121196IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-16121199IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150427.184121189IPR005818Linker histone H1/H5, domain H15
PfamPF005383.7E-12123182IPR005818Linker histone H1/H5, domain H15
CDDcd000734.57E-11123181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSRSNIDLK DKWRNLSVSN  60
GSQGSKDKPR VPKLKALPAP PSATTSSTTT TTLQNAASAL QNAHSDVAVP DSSLNDQDVK  120
NPPRYNAMVF EALSALKDNN GSDLNAIVTF IEQKHQVPQN FRRALSTRLR RLVSQGKLEK  180
VQNCYKIKKD VPSGTKSPLP RPKDVRPAPS QPQPQPQWQS SASVFTTSNE TVKEAADTAA  240
YRIADAESKS YLAAEAVKEA EKISLLVEHS DSMLQLAKDI YEQCSRGEII LLA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135517.10.0hypothetical protein PHAVU_010G136000g
TrEMBLV7ATH30.0V7ATH3_PHAVU; Uncharacterized protein
STRINGGLYMA07G00930.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-74MYB_related family protein